PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.4312s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 239aa    MW: 26246 Da    PI: 4.73
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.4312s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-18107156355
                     AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr ++ +g+++AeIrd + ng   r++lg+f+t e Aa a+++a+++l+g
  SapurV1A.4312s0010.1.p 107 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTGEAAALAYDQAALSLHG 156
                             9*******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.8E-36106170IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-29106165IPR001471AP2/ERF domain
PROSITE profilePS5103223.156106164IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22106165IPR016177DNA-binding domain
PRINTSPR003673.0E-10107118IPR001471AP2/ERF domain
PfamPF008475.7E-13107156IPR001471AP2/ERF domain
CDDcd000181.79E-19107165No hitNo description
PRINTSPR003673.0E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MDHSFFNHPD IEFSPSSTSN SLDLLQDGLL FNPNDDFYLF SSNDSEETLP SDVPFTEAKE  60
SADSITSDAP PNNEAKDLSE LVSSNEIEEK EATPNAKEEN PGREKTYRGV RKRPWGKYAA  120
EIRDSTRNGV RVWLGTFDTG EAAALAYDQA ALSLHGSKAV LNFPIEKVRQ SLGEMKRGLE  180
DRGCSPAEAL KKTHSKRKAV SRKGKGKGLA TKEVVVFEDL GAEYLEELLS SCERGTPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-26105166465ATERF1
3gcc_A3e-26105166465ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002306843.11e-142hypothetical protein POPTR_0005s24470g
SwissprotQ8LDC84e-52ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLB9H8L21e-142B9H8L2_POPTR; Uncharacterized protein
STRINGPOPTR_0005s24470.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1713338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.17e-44ethylene response factor 1